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Here's an excerpt from Phil and my notes:
Several studies in recent years have pointed out correlations between type Ia SNe Hubble diagram residuals and the properties of their host galaxies, includi…
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Moved from FelixErnst/mia#31
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Supporting microbiome-specific data containers in R; in particular [_phyloseq_](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061217) (more widely used) and [_TreeSummarizedExperi…
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We have sequenced **nasopharyngeal (NP) specimens** from infants which are in general **low biomass specimens**. We included non-template controls in each run.
Overall, 128 NTCs and 708 biological sa…
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Hi,
I am trying to use differential heat tree using metacoder and running the following code to calculate differences in abundances based on the two groupings.
```r
families$data$diff_table Warn…
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Hello
Thanks for the exceptional contribution of the pipelines I'm trying prove my own cycle of catabolism, It's possible do it? and how? .
Thanks for your advice....
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Currently, we generate a BIOM file using the read counts. This is definitely the right default from both a compatibility POV as well as w/r/t what downstream libraries expect, but it'd be nice to be a…
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over on twitter, ben woodcroft [asked](https://twitter.com/wwood/status/1562255085463171073) if/when sourmash would report the relative abundance of each genome, taking into account shared k-mers.
…
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Hi,
I tried to use tax_glom to extract the genus level phyloseq of a complete phyloseq object. And I accidently found that the abundances of the genus after tax_glom were doubled. Would you know w…
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Is there a way to format the data for metamicrobiomeR starting from a phyloseq object?