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hi sir：
i run groot wiht card database version 3.0.8 index -w 75; and reprot -c 0.95 .
a metagenomic sample result show as below:
'''
GeneName ReadsCount GeneLength CIGAR …
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Dear CARD team,
when looking at the mphB prevalence in the main bacterial pathogens (calculated using the CARD detection model and displayed on the mphB page), I noticed that this gene was detected…
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`Current antimicrobial resistance gene finding tools can detect the genes from either genome assemblies or sequencing reads but do not exclusively report a genetic profile for the presence of CP genes…
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Hi,
I am new to bacterial genomes and have a few questions on how to interpret the results from MLST.
1. For a contig, I got these results:
ref.fa suberis - arcC(1) ddl(1) gki(1) recP(1,1) tdk(1)…
ramay updated
4 years ago
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hi sir：
i download card-baits.tar.bz2，but could not found index file with baits information which need in
baits_annotation step,What should I do?
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Hi ,
I have run nullarbor on 24 Ecoli. The report failed to generate because it couldn't find the core.txt. Reading through other comments. I found out that I should run make preview to quickly look …
ramay updated
4 years ago
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"resistome_host.jl" 59L, 877C
Error detected while processing /home/.vim/syntax/julia.vim:
line 161:
E59: invalid character after \@
E475: Invalid argument: juliaKeyword^I^Idisplay "\%(\.\)\@1"
…
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Dear all
I have been playing with MetaCompare with some of my coassembly contigs fasta files and corresponding prodigal output files. The MetaCompare output consistently tells me that the [sample]_…
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Hey, I'm wondering if there's a clean workaround to skipping processes in the main_AmrPlusPlusv2.nf.
I'm only interested in running rady samples with alignment to MEGAres as such skipping all the o…
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Can't get 3.0.5 to work. 3.0.4 does work for me.
$ rgi wildcard_annotation -i wildcard --card_json /card.json -v 3.0.5 > wildcard_annotation.log 2>&1
$ cat wildcard_annotation.log #paths edited…