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Hi,
I'm running Spotclean on the provided test data of adult mouse brain following the vignette. However, the function spotclean() produces a Warning and then stops running:
data(mbrain_raw)
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Hi,
Thank you for developing SpaNorm, we are quite interested it it's use.
Currently, I am using a spatialexperiment to run spanorm and have found that it's quite necessary to first reduce the fe…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/sgunz/sosta
Confirm the following by editing each…
sgunz updated
1 month ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/JEFworks-Lab/SEraster
Confirm the following by ed…
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This was raised by @PeteHaitch on Slack.
Currently when we create a SPE object containing multiple Visium samples with `read10xVisium()`, the column names (barcode IDs) are repeated, since 10x Geno…
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Dear team,
I'm attempting to do a conversion between NanoStringGeoMxSet to a Seurat object using the GeoMxTools::as.Seurat() function. The relevant error is:
`Error in names(v)
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Hi, I have a small issue with the SegmentedCell function in the spicyR package. It seems that in the new version of the package (version 1.17.10), this function is no longer present. Can you confirm t…
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Trying to change colors in the DEenrichRPlot plot with the "col" argument, but it does not work
```r
DEenrichRPlot(Seurat_object, ident.1 = "KO", ident.2 = "WT", max.genes = 300, enrich.database…
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Hi MILO Lab,
Thanks _so_ much for a wonderful tool. I'm hoping to use the Spatial Trajectory screen on a Visium V2 dataset (pre-processed with Seurat and converted to a SPATA2 object using the asS…