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I have some code here to visualize a reduced version of the tSNE.
@marypiper, I don't use directly Seurat functions to plot, so I don't know how easy is to add that information to the tutorial, but…
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To generate the plot after the TSNE you are proposing this code:
![image](https://github.com/xuxiaohan/MSNE/assets/74925521/97b0c7a7-a873-4664-987b-b1f8d2275b5b)
But i am not sure what is the vari…
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Hello
I have an array of Tensors which represents words in certain language.
Is it possible to run tsne on this array? thanks
![image](https://user-images.githubusercontent.com/86918539/131692670…
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Hello, I was able to run clustering on Rphenograph and generate TSNE maps. However, when I try to run UMAP, it throws the following error. Would you have an idea on how to troubleshoot this? Thank y…
HoxB8 updated
3 years ago
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**Is your feature request related to a problem? Please describe.**
I would like to have a GPU-accelerated version of the PaCMAP algorithm, a competitor to UMAP. Personally, I would use this with t…
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Dear all,
I am kind of lost how to deal with the results of ALRA.
When I process a Seurat object with ALRA I get a new assay. How do I then use the ALRA computed data to do a UMAP or TSNE reductio…
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#### Description
Perform TSNE on the watershed segmentation masks to determine if these separate better than the raw images. If they do, then we can go ahead and train a U-Net model on these watershe…
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Hi,
When I use the older version, the new creat FCS file will have the tSNE and cluster et. al, but now there isn't any more.
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## Environment information (required)
Please run `diagnose_tensorboard.py` (link below) in the same
environment from which you normally run TensorFlow/TensorBoard, and
paste the output here:
h…
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Where I can get generate_tsne.py?