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# `spatialdata` support in `segger`
Describing use cases and a possible strategy to enable `spatialdata` support.
## Use cases
These use cases can be considered as incremental goals, to accomplish …
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Hello,
I really enjoyed your paper (great method!), and I am applying spaCET for deconvolution of a lung cancer ST Visium data set. For validation, I would like to know how to find the marker genes …
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Maybe this is already possible? But I have 6 10x Visium datasets that I would like to upload to 1 shiny app for data mining and sharing. If possible, would the best approach be to construct 1 master S…
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Can I use this package to load an anndata object which contains spatial transcriptomics data from the 10x Visium platform?
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Hello everyone,
I would like to try BayesDeep since it seems I can use 10x Visium data, but I do not understand where I can find T_cell, Z_cell, X_cell objects (NOT 10x Visium HD).
Can you help …
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Hello!When I run the code in the tutorials-space Mapping single-cell profile onto spatial profile,it raises "TypingError:Failed in nopython mode pipeline (step: nopython frontend) Untyped global name …
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Dear Edward,
I am trying to run bayes space version ‘1.8.2’ with visium ST data (from Cytassist). When I run
spatialCluster(se_filtered, q=8, platform="Visium", d=7, nit.method="mclust", model="…
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Due to several insidious bugs in napari and napari-spatialdata concerning the radii of points in the macOS platform (we have to use points instead of the more intuitive shapes because of performance r…
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### Zarr version
2.17.1
### Numcodecs version
0.12.1
### Python Version
3.11
### Operating System
linux-ubuntu
### Installation
pip
### Description
Hi Guys,
I need to convert my h5 file fr…