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when following the tutorial at the step ds.ingest_samples(sample_uris = batch1_uris) I get the error:
RuntimeError: TileDB-VCF exception: Cannot open VCF file; failed to load BCF index.
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It has come to my attention that Properties can be associated to objects other than `IFCOBJECT` or `IFCOBJECTDEFINITION` via instances of classes such as `IfcMaterialProperties` (see https://ifc43-doc…
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Not an issue, just thought I'd stop by.
A while ago I mentioned I was working on a Latex language server, and the JSON communication was "almost complete".
That was an incorrect remark.
Howev…
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Hello, I'm interesting in identify if my sample has a insertion, deletion or if it's heterozygote (in a specific region). To do this I ran the next code
`bcftools mpileup -Ou -r chrX:start-end -f ge…
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Hello,
I am trying to apply chisel_nonormal on a 10x scDNAseq data. But, I am getting a long sequence of error messages that appears to be similar. Can you please help me with this?
Specifica…
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Hi,
I have some questions about the fixref plugin :
1) Looking at the code, I can see that "TOP-compatible" and "BOT-compatible" outputs in the logs are not counts but can only take 0 or 1 value…
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Hi!
Thanks for the helpful archaic vcffiles. I find that the hg38 file [individuals_highcov.2.bcf](https://zenodo.org/records/10806726/files/individuals_highcov.2.bcf?download=1) contain the site fro…
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How to parallel mpileup as sort or merge?
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On OS X El Capitan 10.11.6, when creating the conda environment I get the following error:
```
gcc -undefined dynamic_lookup -L/Users/markw/anaconda/envs/gatk/lib -L/Users/markw/anaconda/envs/gatk/l…
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Is it possible to make a selection buffer that looks like this in ivy? I am familiar with using a transformer for annotations, I was wondering more about the separators.
![image](https://user-i…