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mibby updated
2 years ago
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Hi Colby,
We are using Speedseq 0.1.2 to process the whole genome For ex: NA12877. We are getting many calls with QUAL = 0. Can we just filter them from the vcf file after processing through speeds…
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Hello.
I just saw your preprint go up and was wanting to generate ROC curves from the caller qual scores to compare to your single-point results but it appears the raw data is not available. Would …
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For the gene HGVS search, I added a message:
"Warning: {gene_symbol} has {num_other} other transcripts in {genome_build.name} that may resolve to different coordinates. You may wish to search for the…
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I've been running tests on various data sets, and have had a few cases where `graphtyper genotype_sv` makes VCFs with almost every site having zero depth and a genotypes of "./.". Whereas the identica…
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Hello, thanks for your great tool. Now I have ~10k SVs detected using WGS data, and prioritizing them according to their functional impact will be helpful to me. I have installed the SVFX tool but got…
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Hi
This is a fantastic project that I have ever seen.
Could you please share the released model? As on the inference step, it is said that "using the released model"
Also, is there …
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"s/.../.../g for values %hash" works fine to modify every value, however "s/.../.../g for keys %hash" does not. It would be nice if that could be made to work
A use case is parsing CGI params wher…
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Thank you for a great work.
I would like to reproduce the results and compare to another engine. Following the documentation, it appears that you have already included a test in ann-benchmarks:
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