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* [x] ~~determine why preprocessor is not detecting systemroot~~
* [ ] consider adding knowledgebase preprossessor plugin for systemroot that falls back to `C:\Windows`
* [ ] consider expanding to m…
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Hi @SAMtoBAM, you opened an issue in our WhatsHap repository on GitHub while we were still on Bitbucket, so no one saw it. We have now moved to GitHub, and I was forced to delete the old issue so that…
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Trying to run minimac4 v4.1.2 I am getting segmentation faults:
minimac v4.1.2
Imputing 1:1-20000000 ...
Loading target haplotypes ...
Loading target haplotypes took 0 seconds
Loading reference…
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$ bcftools --version
bcftools 1.10.2
Using htslib 1.10.2
Copyright (C) 2019 Genome Research Ltd.
$ cat regions_test.txt
NC_000001.11 1
$ cat -A regions_test.txt
NC_000001.11^I1$
$ bcf…
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Some of these look legit, some may arguably be false positives.
I also see some assignments inside of `assert()` calls in the diagnostics (there may be more in the code), which is generally conside…
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I am getting this error.
```
[W::bcf_hdr_check_sanity] GL should be declared as Number=G
21:53:26 [ERROR] Sequence 1 not seen in FASTA
```
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Garuda Linux
6.8.4-zen1-1-zen
KDE Plasma 6 - X11
Some versions of Electron apparently delete all your bitmap fonts from your font cache and you must use fc-cache --force to get them back. This i…
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Hello to all,
I have 10 vcf files - 5 female fish and 5 male fish, I have merged all 10 fish to one vcf file.(all_fish.vcf) I performed the VcfSampleCompare analysis on 'all_fish.vcf' ,
My command…
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I tried to merge the trios' gvcf files which generate by DeepVariant and the command and error message show like below:
`./glnexus_cli --config DeepVariantWES --bed exon.bed HY20080095.gvcf HY20080…
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I'm trialing using GLnexus to merge gVCFs produced by the isaac/starling workflow from Illumina, as an alternative to using gvcfgenotyper (as gvcfgenotyper is extremely memory heavy).
I know it's n…