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Hi Chris,
Thanks for making this fantastic package!
I am working on the colocalization analysis with fine mapping using eQTL and GWAS. And I got some questions when I use this package.
Curre…
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Dear @yu-1011 @liusihan @Fefe-W
Thanks for your the great paper!
The EAS eQTL/sQTL summary data download urls in the paper are broken. How to download EAS QTL summary data?
Thanks in adva…
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Do we have any roadmap or timeline to release cell-type eQTL identification based on RNA-seq deconvolution within GTEx samples?
Thanks
Shicheng
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Hi,
After formating the biom.df and eqtl.df objects and adding a $type column to each, I got two data frames looking this, which seems fine:
> head(biom.df)
SNPID CHR POS PVAL …
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Hi @egamazon @zdangm @gamazonlab
Thank you for the wonderful method. I met some problems when i try to use the MR-JTI analysis.
First, i run the MR-JTI with the example file,mrjti_example.txt.
s…
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I have installed and added the CDN as follow to the config.json file? How to use it in tracks? Limited docs
Line added to config.json
```
"configuration": {
"plugins": [
{
"name":…
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C:\Work>java -Xmx2g -jar .\emp\eqtl-mapping-pipeline-1.1.16-SNAPSHOT-dist.jar
no main manifest attribute, in .\emp\eqtl-mapping-pipeline-1.1.16-SNAPSHOT-dist.
jar
the all-in-one jar file has no mani…
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Hello, I tried to use the LDSC for Partitioned Heritability from Continuous Annotations, but we got the following error information. Can you help to check what's the reason for this kind of error? Tha…
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Laura taking lead. Data needs.
If investigating general relationship between methylation rate and expression:
- Methylation status (methylated or not, locus-level) x individual matrix
- Methyl…
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Hi @mkanai
Thanks for your amazing work **_Insights from complex trait fine-mapping across diverse populations_**. I have a simple question regarding this work, because I couldn't find the other a…
Ojami updated
2 years ago