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Hi, I was running fastqc on my computer and there is more than 200G left. I also run ulimit -c unlimited. But this problem still exists.
fastqc Jag1-6_S6_L001_R1_001.fastq.gz --dir ./
applic…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky Linux release 8.9
### Workflow Version
v1.2.1
### Workflow Execution
Command line (Cluster)
### Other workflow exe…
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Hello，
I just used the _Ktrim_ to trim Ribo-seq reads, but i found it did not work. then, I tried _galore_trim_ and _galore_trim_ could trim residual adaptor from the reads.
```
`[ymwang @ ~/linqin…
Ci-TJ updated
4 years ago
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Hi,
Thanks for the useful package you provided, I m trying to repeat your analysis on testdata so then I will use scFusion on my single cell RNA-seq ALL dataset to find fusion genes. I have an issu…
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hi,
I don't know how to modify the conf.yml.
the error
`------ Reading the VP info file: ./example/VPinfo.txt
------ Demultiplexing Fastq files based on VPinfo file
>>> Reading Fastq: A…
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Dear Shahab,
First of all, many thanks for making this tool available. I really want it to work well because our data should fit the requirements for this method.
I have tried this on my data af…
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Hello,
I'm trying out Ribotin to assemble some tangles. They are probably not rRNA but I assume that it doesn't really matter. The morph size appears to be around 3 kbp.
```
ribotin-ref --appro…
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Dear Developers,
First I want to thank you for the effort you made creating SOVAP and facilitating virome analysis to novices in the field like me.
I am writing you this e-mail to ask you about a pr…
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Hi Mark.
I'm having an issue where it doesn't appear to be installing the conda environment. I'm in my base conda env, and I'm running the following command:
nextflow run main.nf -resume -profil…
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Previously (version **0.11.4**), when submitting sequence files for analysis, no changes would be made to the audit tables. That is, by running `select * from sequence_file_AUD where id = 1;` after s…