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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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Interop Contact:
Active in 2021: Active
**Researchers**: Xihong Lin (Harvard T.H. Chan School of Public Health)
## Analysis Question:
Large-scale Whole Genome Sequencing (WGS) studies and biobanks h…
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Hi, I'm new to genome assembly. Following are my two question about the use of hifiasm.
I wonder whether the multiple ccs sequencing files can be derived from several samples, or are supposed to be d…
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I'm interested in using `mity` to assess within-individual variation in mitochondrial DNA. I have assembled mitochondrial genomes for ~300 individuals of a non-model fish species using `MitoZ` and fou…
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So, I performed direct RNA sequencing on nanopore and got fast5 files for them. When I do tombo resquiggle, should me reference fasta file by DNA or RNA sequence in fasta?
For instance, if I sequen…
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Some journals now require detailed metrics, e.g. [International Journal of Cancer](https://onlinelibrary.wiley.com/page/journal/10970215/homepage/forauthors.html). This pipeline does not calculate mos…
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https://www.biorxiv.org/content/early/2018/03/03/275628
> The diagnosis of multidrug resistant and extensively drug resistant tuberculosis is a global health priority. Whole genome sequencing of cl…
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I've tested this script, and I believe it should work to get the Manubot responses into the format I need:
python script
```python
"""
adapted from: https://github.com/greenelab/lab-website-te…
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Hi, following are my two question about the use of wtdbg2.
I wonder whether the multiple ccs sequencing files can be derived from several samples, or are supposed to be derived from only one individu…
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Assuming none of these features are added to #133 which hasn't merged at time of writing:
## Must haves
- max line widths are currently ignored.
- rework how command text is processed
- T…