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I know that this might sound a little too ambitious but I think it is not.
We should think about rewriting the complete frontend because of multiple reasons:
1. the code is a mess (IMHO)
2. we sh…
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If a user runs a custom script with its own CLI arguments `pychimera ~/path/to/myscript.py -h`, `pychimera` will greedily consume the full argument list, when it should only execute the script and pas…
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The 2D plot of hits (x axis = start, y axis = lenght (or end) just does not work as the longest hits are so spearated from othe x-axis that most people will just not see them. The lenght of a hit must…
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We could display the name of the tool being executed instead of "Bioinformatics Toolkit". This would be useful for quickly identifying jobs when one has many tabs open.
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due to some of today's changes
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I get emails from Edge/Explorer users every once in a while, complaining that certain features do not work. Our Toolkit is not rendered properly on these browsers and I don't think we should try to ma…
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e.g.
Start an HHpred job and when it is running, go to the 'parameters' tab and try to change 'No. of target sequences'
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HHPRED_MANUAL displays the process log of some other currently running job.
Steps to recreate the error:
1. Start a new HHblits (or any other) job.
2. Go to this job: https://toolkit.tuebingen.mp…
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Sorry, failed to fetch structure.
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Forwarding, selection etc. are broken. I have no free time to test the Toolkit presently and I am afraid we are just accumulating bugs. Please urgently reset the Toolkit to: https://github.com/zy4/Too…