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Darren Creek and his lab have carried out metabolomics work on several OSM compounds (see #469 for background). Darren constructed a powerpoint of the results (below) and provided the following commen…
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"I would just add that there has not really been a consensus on where to put metabolomics data - something like GenBank would dramatically change the landscape for metabolomics data sharing"
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Dear Prof.Chen,
Thanks for your excellent work! I am a graduate student majoring in metabolomics. According to your User_guide, I have installed R, Rstudio, Rtools40, CPLEX and Git. And my question…
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We've implemented some functionality that allows to group LC-MS *features* (i.e. defined by their m/z and retention time range) into *feature group* where ideally each feature group collects all featu…
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hi,
Thank you for developing this wonderful package, which I have been needed to process metabolite raw data.
Tutorial says that a feature_list.txt file is required. What kind of processing is n…
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During the PR from @mmattano https://github.com/bigbio/proteomics-sample-metadata/pull/680 we detected multiple fields that we need to decide if they will be required, recommended or optional:
- `…
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Hi,
in addition to the name and eMail, the MTD section should support the ORCID as an optional persistent identifier for people
somewhere near:
https://github.com/HUPO-PSI/mzTab/blob/master/speci…
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Dependent on #170
The json output should validate against nmdc.json
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**Describe the bug**
If the BaseSimilarity.matrix method is given two lists of spectrum objects which all have resulting scores of 0, and the array_type is set to "numpy", the indexing of the numpy s…
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I have put this separately, because it needs more involvement from the application authors.
**GENERAL**
Application descriptions need to be more uniform, like 2-3 sentences per application about w…