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A long-running 3-way multimer job had finally reached the end of its prediction run, and was set to do the ranking step (& lightly refine the top model), when the program frustratingly crashed with th…
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Hi,
I'm interested in running PhyloCSF++ with annotate-with-mmseqs on Chinese hamster, but I am getting an error when it reaches the _mmseqs createsubdb_ step:
` ./phylocsf++ annotate-with-mm…
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Hi , I want to build MSA service through MsaServer inside ColabFold, and I want to let other users use localcolabfold to search MSA in the MSA service I built. but I'm having 3 problems.
1, I don'…
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I'm trying to get mmseqs to output a full global multiple sequence alignment. So far, when I use the cluster mode, it gives me the MSA, but with parts with edges sequence gaps (normally in the N- and…
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As the data that can be processed with mmseqs is generally quite large. The tsv output is usually very large. I wonder if it would be difficult to create hdf files or other more efficient file formats…
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Dear author,
I am working a NR annotation for a large number of samples, and I find MMseq2 is a better software. So I would like to ask whether I can run faster together or one by one, My…
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Hello I recently installed genomad v1.8.0. However, when I tried to run the command, it return an error below.
(genomadv1.8.0) dostvip2@DESKTOP-L5H6T8M:/mnt/f/Klebsiella$ genomad end-to-end 09_MOB…
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I'm trying to predict structures for a bunch of sequences from the same family. For this reason, I don't need to search against the entire uniprot30 or envdb. I just want to make a reference database …
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**Is your feature request related to a problem? Please describe.**
The current design is confusing: it is not clear to the user what these features are.
**Describe the solution you'd like**
A sin…
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## Expected Behavior
I want to create msas for a batch of heterodimers using colabfold_search and predict the structure for the msas using colabfold_batch without using the mmseqs server for msa gene…
Nuta0 updated
6 months ago