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HI，
when I used the RSRS as reference,the error is as follow:
##### ERROR MESSAGE: Couldn't read file MToolBox-master/MToolBox/data/MITOMAP_HMTDB_known_indels_chrRSRS.vcf
Can you tell me how or w…
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It seems that mapExome.py cd's into the wrong directory at some point:
```
##### EXECUTING READ MAPPING WITH MAPEXOME...
mapExome for sample U006279_A_MT, files found: test_out/U006279_A_MT.f…
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Dear,
Here is the description of the error:
`Parsing variant data for sample IonXpress_003...
Best haplogroup predictions for sample IonXpress_003 : ['V_150', 'V16']
Functional annotation for ha…
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When trying to launch MToolBox with a fastq.gz input file, and specifying this input type in the config.sh, the program returns an error saying "Input format not recognized".
Ros85 updated
7 years ago
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The generation of multiple annotation.csv files for fragmented samples with lots of best predicted haplogroups causes issues in summary.txt generation.
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Hi,
I am trying to run MToolbox and I am receiving the error "line 207: `in-out_folders': not a valid identifier"
I performed a standard installation and this is my config shell
[shabanb@thing1 mtoo…
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Hi there,
I found several inconsistencies in chromosome naming scheme when using the pipeline with rCRS option, and I would like to make some suggestions.
First, in `test_config.sh`, instruction for…
ghost updated
8 years ago
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Hi,
I was wondering if you are aware that `assembleMTgenome.py` in the master branch breaks if `sample_name` doesn't have an underscore. I noticed that there has been a change in the code to accommod…
ghost updated
8 years ago
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The "CI_lower;CI_upper" column in .annotation.csv is empty even vcf files have heteroplasmy confidence values
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It would be great if some example data/output was uploaded here . This way users can check their installation by running MToolBox on the examples and see if it matches up with the expected output.
T…