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I seem to be having some trouble importing theano (in order to run pymc3).
I've tried activating a fresh environment, and conda installing theano from there, however, I still run into the same err…
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## Short Description
I have a distribution that `plot_ppc` likes to zoom out of, possibly because of the tails. It zooms out so much by default that I can't really check my model posterior with it.…
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Evaluate improvement in code efficiency for the following
- [ ] pyMC3
- [ ] cov_exp_quad function in Stan
- [ ] multi_gp function in Stan
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theano 1.0.3
while running this small script
import pyfolio as pf
#stock_rets = pf.utils.get_symbol_rets('FB')
import pandas as pd
import gzip
import numpy as np
stock_rets = pd.read_csv(gz…
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When i run `Ch1_Introduction_PyMC3.ipynb` sequentially everything works great until i get to the following line:
```
### Mysterious code to be explained in Chapter 3.
with model:
step = pm.M…
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Here the roadmap for HMC implementation:
- [ ] 0: basic GP regression with model and NUTS from [`pymc3`](https://docs.pymc.io/)
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First of all, thanks for the illustrative notebook. I'm trying to replicate the result but maybe using a later version of pymc. I got
```
ModuleNotFoundError: No module named 'pymc3'
```
If I cal…
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These names are subject to change, but basically mimicking what PyMC3:
https://docs.pymc.io/api/distributions/multivariate.html#pymc3.distributions.multivariate.LKJCholeskyCov
and Stan:
https://m…
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Hello,
I am trying to set up a python environment to use gatk DetermineGermlineContigPloidy module. I cannot use conda. I have tried to install in a virtual python environment the dependencies foun…
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Pymc3
Emcee
Corner
Statsmodels
...
One to think about.