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I am running rgi for my protein.faa files and this is the error message I get:
command: rgi main --input_sequence /home/khanam/Active_Projects/Resistome/Genome/TW008.faa --output_file /home/khanam/…
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```
Isolate,Found,+,-
S20414-2017A_S86_L001,2,?,?
S62518-2017A_S111_L001,2,?,?
S51403-2017A_S22_L001,2,?,?
S20202-2017_S160_L001,2,?,?
S62501-2017_S114_L001,2,?,?
S62513-2017A_S42_L001,2,?,?
S…
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abricate --summary option is returning the following for each entry:
> Use of uninitialized value in hash element at /home/sharb/miniconda3/bin/abricate line 223, line 1.
> Use of uninitialized v…
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I've finally managed to install Nullarbor on Bio-Linux 8 with the help of Stephen's install script and if I run 'nullarbor.pl --check' then it all looks ok but if I run the makefile against the demo d…
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Hello.
When I run nullarbor on our HPC, i see it failing with the following message in the end of the output:
```
removed ‘/tmp/tmp.X4YUe1jiHM/prokka.log’
removed ‘/tmp/tmp.X4YUe1jiHM/prokka.fna…
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I've run Nullarbor successfully a few times, including all of these isolates except one, but these 7 isolates (of a total 402) don't seem to be processing and appear to be stopping the program this ti…
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Hi, I tried to install the nullarbor on python 3.7 but it says this conflict with the current python so I created an environment for it and activate it but upon check I got this error:
ERROR: Coul…
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Do ticks represent 100% identity AND full length match?
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When re-running nullarbor with `--force`, although some files in the report folder are updated, not all of them are:
```$ ll
total 64540
drwxr-xr-x. 2 jasonk1 domain^users 4096 Aug 21 10:03 .…