-
```
What steps will reproduce the problem?
1. after installation, when running
"/BiO2/EwhaColonLung/Python-2.7.2/bin/jsm.py train joint_snv_mix_two", error as
follow:
Traceback (most recent call las…
-
arkal updated
8 years ago
-
Hi there, thanks for developing such an easy to use tool. We would like to run SvAnna with VCF outputs from PAV. It seems that SvAnna is truncating the vcfs in a way that is not obvious. We are runnin…
-
### Description of the bug
Hi there
Thank you for the pipeline, it was working good using just frebayes. now add sarek and mutec.
I need to find structural mutations, and de novo mutation, however …
-
Hello,
I'm using VCFAnno with the new SpliceAI VCFs from Illumina, and they've recoded the VCFs with this header (I...have...no...idea...why):
```
##fileformat=VCFv4.2
##fileDate=20191004
##r…
-
Hi
I am using version 1.4.2 for SNV analysis. I encounter the issue in Part 4: Filtering the same SNVs from replicates. Which gives me SNV-Singlets but 7.SNV-final only gives empty TSV file. The er…
-
Maybe put under the "Group by SNV" radio button?
-
Hi,
I am working with WGBS data from a triploid organism and would like to perform SNV calling using CGmapTools. The BayesWC strategy is based on the assumption of diploid genome. Would it be possibl…
-
Hi,
Here I report a germline SNV which called as an somatic SNV.
```
chr7 150556055 . CG GC 266 PASS STATUS=Germline;SAMPLE=DN2003754SLZAA02;TYPE=Complex;DP=…
Gerde updated
3 years ago
-
We usually filter variants against a panel of normal samples. This can be done post variant calling by genotyping detected variants in this panel and call anything at a certain threshold in a minimum …