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Hi, I recently tried running MuSE with hg38 reference and appropriate hg38 dbsnp database. After 10 hours I got segmentation fault(core dumped) on chr 10. And what i want to ask here is, if I made a m…
W4RJ4 updated
6 years ago
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### Submitter Name
Laura Corson
### Submitter Affiliation
Oncology Consultant for Somatic ClinGen
### Submitter Github Handle
_No response_
### Additional Submitter Details
_No response_
### P…
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Creating this ticket to begin collecting requirements and considerations for modeling "Genetic Conditions". This is the name we have given to the concept of "A disease or set of one or more co-occur…
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I have a set of whole genome sequencing data which has sequencing of adjacent normals, primary tumours and cell cultures (CC) derived from the tumours. I looked at the intersection and difference betw…
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Hi,
I used DeepMosaic to detect mosaic SNVs from low-depth WGS data, because it supports low-depth samples, but DM does not call mosaic INDELs.
I would like to detect mosaic INDELs from ~30X WGS…
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Hi
I am trying to get `Mutation data (hg19)` for `ESCA` cancer in `maf `format; I have done so but I am getting error
Can you help me please
```
> query.maf.hg19 View(query.maf.hg19[[1]][[1]]…
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Hello,
I followed the installation steps detailed on here:
https://gemini.readthedocs.io/en/latest/content/installation.html
Everything worked until the step to run the unit tests, running ba…
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@jjgao commented on [Fri Dec 22 2017](https://github.com/cBioPortal/GSoC/issues/40)
**Background**:
Signatures of mutational processes in human cancers can be inferred from somatic mutations data…
jjgao updated
4 years ago
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Hi @wheaton5,
If users are working with non-diploid cells, such as cancer cells that are aneuploidy (loss and gain), can users adjust the freebayes step as follows?:
`freebayes -f ref.fa -F 0.01…
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Hello,
I am attempting to install your package. I modified the build_step1.bash script like so:
```
#!/bin/bash
#SBATCH --partition quick
#SBATCH --time 03:00:00
#SBATCH --job-name build1
…