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Here is our proposal for a CTV on Archaeological Science. We have organised the proposal into the sections requested in the instructions (scope, packages, overlap, maintainers):
_Scope_:
Archa…
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Clean SLD data, factor analysis and spatial auto correlation example by 910add0f8cdf4128179d36f9d525f4ab10f837df
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Hi MILO Lab,
Thanks _so_ much for a wonderful tool. I'm hoping to use the Spatial Trajectory screen on a Visium V2 dataset (pre-processed with Seurat and converted to a SPATA2 object using the asS…
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Hi,
I'm trying to read in some CosMx data - I have a dataset formatted into a folder with the CellLabels and CellComposite directories and then the relevant CSV files. When I execute the code below…
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The current `week8-discussion.qmd` is not very effective, so I think we should come up with a new activity. A non-spatial skill that they should be practicing at this stage in the quarter is creating …
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Hi,
Wonderful job!
I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how [Shinycell](https://github.com/SGDDN…
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Hi Anna,
I want to use NCEM for other MERFISH data to compare with other tools that how the information differs. I followed your tutorial
https://github.com/theislab/spatial_scog_workshop_2022/b…
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Hi,
I have been trying to use SPATA2 with Seurat and I have been trying to convert/transform one to the other (initiateSPATA > SPATA2 object > Seurat) and also (initial process and filtering in Seur…
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## Improvement of spatial DA considering localisation
- Short and efficient explanation: https://epic.awi.de/id/eprint/31369/1/Offenbach.pdf
- https://www.sciencedirect.com/science/article/pii/S03…
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Hi,
I wrote a notebook a while back to use Banksy on brain spatial data (from slideseqv2_analysis.ipynb vignette). It worked without any issue, I re run it today and the only result I get is the cl…