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Hi, Dr. Braulio Valdebenito-Maturana
I apologize for reaching out this way, but I was unable to find your valid email address and had to ask my questions here. I recently came across your publicati…
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Hi,
We wanted to try xTea on a plant species. Is that possible or does it require a human reference?
Agnieszka
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Hi,
I've tried to annotate a fungi assembly using an available RNA-seq data. For the first run, for some reason PASA failed, but the program still run and gave me about 10k genes. For a new run, I h…
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I have been using the cactus-hal2maf tool to look at orthologous regions in the genomes of a set of primates, but I noticed some interesting behavior that I don't really understand. I wanted to pull o…
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Hi all,
I have performed dorado modified basecalling on my data, obtain my assemblies and performed a modkit pileup on them to have my methylation data.
I have filtered my data to have output as f…
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**Are you using the latest release?**
I'm using the latest version installed from conda
**Describe the bug**
I ran the command
funannotate test -t predict
and it stops with the err…
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@iminkin
Hi, iminkin , thanks a lot for your amazing tool, it plays a very important role in my research !
However, I got 2 problems when I did the experiment with sibeliaz to find the colinear b…
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hi, I'm confused about the condition here. in the log of funannotate predict, I saw that the the value of 'augustus' is set as 'pasa', while it was set as 'busco' in many other people's logs. I checke…
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Hello,
Thank you for providing this remarkable tool. I'm curious about the possibility of utilizing it for the detection of other interspersed repeats beyond TEs. Specifically, I have a collection …