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This is a really smart tool. More mappers should include support for circular genomes. Several questions/suggestions:
1. In order to make this more universal, why not extend each sequence by 100% of …
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After building the image, I did this :
docker run -it --rm pbsuite-15.8.24
cd /tmp
Jelly setup protocol.xml
Jelly mapping protocol.xml
The setup step seems to be ok (i.e. no e…
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Dear VG Team Members,
I hope this message finds you well.
While using the vg giraffe tool to align short reads, I encountered an issue similar to the one described in issue #4171 . Specifically,…
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SO far we have downloaded available micromonas transcriptomes and genomes and mapped the small-size fraction (0.8-5µm)Tara metaG and metaT reads to those references. We see different results from meta…
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### Already reported ? *
- [X] I have searched the existing open and closed issues.
### Regression?
Yes
### System Info and Version
System/Version info
```sh
Hyprland 0.45.0 built from branc…
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```
I have been using STAR with Illumina 101bp paired end reads. The first set of
libraries I sequenced work great going through the pipeline, but I have had a
very strange problem with the most rec…
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```
What steps will reproduce the problem?
cd "sofia-ml-read-only"
./sofia-kmeans --k 100 --init_type random --opt_type mini_batch_kmeans
--mini_batch_size 100 --iterations 1000 --cluster_mapping_ty…
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```
What steps will reproduce the problem?
cd "sofia-ml-read-only"
./sofia-kmeans --k 100 --init_type random --opt_type mini_batch_kmeans
--mini_batch_size 100 --iterations 1000 --cluster_mapping_ty…
-
```
What steps will reproduce the problem?
cd "sofia-ml-read-only"
./sofia-kmeans --k 100 --init_type random --opt_type mini_batch_kmeans
--mini_batch_size 100 --iterations 1000 --cluster_mapping_ty…
-
```
What steps will reproduce the problem?
cd "sofia-ml-read-only"
./sofia-kmeans --k 100 --init_type random --opt_type mini_batch_kmeans
--mini_batch_size 100 --iterations 1000 --cluster_mapping_ty…