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Hello,
I'm attempting to run force calling from sniffles and are running into a few errors. The version I'm running is from develop (1e47c23a01d6b49045037bd0347776537ea85276)
Error 1:
When attem…
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Hi mvallieres!
I have to process some fundus images and i don't know the number of pixelW and sliceS..... So how to solve this problem?? Thanks!
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I downloaded data from https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=119702524
The link does not seem to have data now. I am looking for HER2 status labels for Yale cohort. Pleas…
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Hi,
I was trying to use this exciting tool to call SVs using HiFi reads on a genome assembled from those same reads.
I can run `SVDSS index` and `SVDSS smooth`. The file smoothed.selective.bam is ge…
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Sorry to bother you again, after using the ONT data to call the structure variation, we modified the VCF content with format_add_ALTseq_LR.R. The following error occurred, so we checked the VCF file, …
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Currently these fields determine a unique Variant:
- ref_genome
- position
- ref_value
We should add:
- type (SNV vs LI vs DEL etc.)
How much granularity do we want? For example, do we want to disti…
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hi again. im sorry for all these questions but in osu after you convert it and put it in your game, how long does it normally take to load because i waited for a while but it just didnt load. if you k…
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I am studying possible SVs in dm6 and I managed to do the entire analysis with default parameters at 5, 10, and 100kb.
I was wondering if it is possible to polish my analysis by doing the following:
…
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This issue is part of an effort to reconcile the current [structural_variant database model](https://github.com/cBioPortal/cbioportal/blob/87e5a228d80a31515bf1a3e762bd2d70db89d2fb/db-scripts/src/main/…