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Hi there,
it seems that BCF is not exporting failed entities from the IFC Tester results.
![bcf 2](https://github.com/IfcOpenShell/IfcOpenShell/assets/47089424/fbcb79a3-896c-486d-8f1d-3fdd3b3a6…
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Hi,
running Plink (v2.00a4LM AVX2 Intel) errors out when merging multiple datasets.
```
$ ../plink2 --debug --memory 8000 --threads 6 --pmerge-list input_sources.txt --out merged
PLINK v2.00a4…
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### Feature Request
Based on issue #23 (deprecate "nextclade_json_parser.py and use VCF file for mutations tracking), we should be able to more easily create consistency between how we track mutation…
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Hello @brentp,
Thanks for this awesome tool!
It would be great, if duphold could be used to compute (B Allele freq /DHGT field) from gVCF files(where non-variant sites are represented as blocks t…
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Fail to install with command ` pip install -r requirements.txt `
```
Collecting pandas~=1.2.5 (from -r requirements.txt (line 1))
Using cached pandas-1.2.5.tar.gz (5.5 MB)
Installing build dep…
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Dear Developers, I encountered the error message above after normalizing my bcftools and using the view command
I used this command to normalize
_bcftools norm -m-both -f data/ref/chr8.fa VCF/vari…
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The Crypt4GH encrypted file format standard is currently part of the hts-specs repo, where it lives next to the SAM, BAM, CRAM, VCF, BED file format standards: https://github.com/samtools/hts-specs. T…
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I have problems with the ConfigParser.py it could't find the section "names" in my config file. I double check that all the names will be ok and the path is ok. I try to find if the ConfigParser.py ha…
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Dear Doctor,
I used a VCF file that mixed 400 samples to distinguish the source of cells. The script ran without any issues, but did not produce a result file that could be judged. I would like to …
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Now that the IO code of hyperspy has been split, it may worth considering re-licensing the code with a more permissive license in RosettaSciIO.
I don't a strong view on this topic, but I start this d…