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Oddly this publication page shows an ortholog section containing the pombe gene
http://pombase2.bioinformatics.nz/reference/PMID%3A25533340
haven't seen it on any other publication pages so far
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Suggestion:
Right below the Title section.
one line for ECO term name
one line for xref to Intact Evidence
NB: DIP xrefs will have to be manually updated after import (at the moment they are not…
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The Orthology Working Group recommended that data be pulled directly from PANTHER. The Portal Use Case Working Group (PUC WG) has some questions about what data exactly to pull, and so we would like …
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This is for Judy
After analysis of experimental annotations from AGR MODs
This is a list of the number of gene products assigned to each category for the AGR organisms plus human:
only experiment…
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Use:
ftp://ftp.pantherdb.org/ortholog/current_release/RefGenomeOrthologs.tar.gz
to index and display LDO, O, and P orthology between 2 genes. This data should be displayed on the search results fo…
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@mbrush
omia, panther and zfin ingests use the term RO_HOM0000017
which no longer appears in https://raw.githubusercontent.com/oborel/obo-relations/master/ro.owl
alternatives appreciated
ditto fo…
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This is issue should contain all the desired search enhancements for the prototype. We will keep this updated as long as items get solved.
1) Searching for genes using the gene ID
For example, if I s…
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the gene tab on disease pages shows orthology relationships. this is not right.
http://beta.monarchinitiative.org/disease/DOID:10595
is this misconfigured, @kshefchek ? or is this coming from upst…
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Hey, I just encountered a weird problem when running funannotate. I started `funannotate predict` with some `--transcript_evidence Trinity.All.fasta --protein_evidence protein_evidence.fa` and at some…
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Gathering outstanding things from other tickets (where they don't really belong), including #1234 and #1251 ...
stats page yaml:
https://github.com/pombase/canto/blob/master/root/stats/annotation.mht…
mah11 updated
8 years ago