-
```
In a post on low ESS values for *BEAST analyses, Heled commented "There is a
bug in BEAUti which prevents it from emitting the updown operator in some
cases, which can slow convergence." which …
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I'm talking about actual errors here, not debug output. I have a template that works under the development version of beauti but not the latest release, but no additional information. All I know is …
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This is what happens currently:
``` java
public List getChildren() {
final List copyOfChildren = new ArrayList();
copyOfChildren.addAll(children);
return copyOfChildren;
}
```
Instead, c…
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This is a deployment problem with the latest Mac OS X operating system:
From Tracy Heath:
"There were some initial issues getting started because some people who had downloaded the Mac version got s…
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Searching through the combobox for adding an alignment when there are many other packages loaded is cumbersome.
Having a dialog with buttons, or just a JList to pick from with 'Import alignment' as d…
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For small complex eigenvalues of the Hessenberg matrix, `beast.evolution.substitutionmodel.DefaultEigenSystem.hqr2` tries to access index `-1` of `double[][] h`.
When `en==1`, the loop starting in li…
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(1) Download release 2.1.3 dmg for OS X.
(2) Open DMG.
(3) Drag BEAST 2.1.3 folder to Applications
(4) double-click on BEAST application
(5) Get this message: '"BEAST" is damaged and can't be opened. …
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I have just cloned the current repository, and tried to build everything from source.
`ant` runs without complications, but does not build `beauti.jar`, and the target that looks like it is supposed t…
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At http://www.beast2.org/wiki/index.php/DensiTree_How_To%27s the FAQ `Can I batch process tree set files?` has the following text, and I'd like to add an example:
```
Use the command line options to …
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It seems that the RealRandomWalk operator tries to resolve a null pointer when it is the first operator called.
For the Beast xml file listed below, I get
```
java.lang.NullPointerException
at …