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https://mp.weixin.qq.com/s/Y203ep6cpR6DyTjoMKgflA
ixxmu updated
4 months ago
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Hi,
I'm following the [step-by-step tutorial](https://pepatac.databio.org/en/latest/tutorial/) with my mouse ATAC-seq data.
The only deviations I made from the [step-by-step tutorial](https://pepa…
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I am using FindTransferAnchors() and TransferData() to annotate cell types using a reference dataset. My reference dataset is much larger than my query dataset. As such, when performing jackstraw, e…
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Hi there,
Any ideas about whether ABC can be used with single-cell ATAC-seq data?
Best,
David Green
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https://mp.weixin.qq.com/s/QXZgq-kefkiX1GwtKxvIUw
ixxmu updated
6 months ago
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https://mp.weixin.qq.com/s/sHd6iz5JenKJV64pbMDxaA
ixxmu updated
5 months ago
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Hello,
I ran process_atac on my ATAC seq files, and then differential_md_score. Those seem to have run fine. But when I run tf_result_explanations, I get the below error. I used the HOCOMOCO prep…
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Dear team,
Thanks a lot for these amazing tools!
While making custom cisTarget database files, I encountered a few problems:
Q1: If my fasta file's headers only contain gene names, does this …
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ATAC-seq pipeline: what exacty is ready.bam - is a full bam or NF bam file?
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Hello,
I have a few questions regarding the subject mentioned. I would appreciate it if you could kindly address them.
When running the code as shown below, I encounter the following warning messa…