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"User Story
* *Als:* APM
* *Wil ik:* kunnen zoeken op de GEMMA2-indeling i.c. Bedrijfsfuncties, Applicatiefuncties en Referentiecomponenten
* *Zodat ik:* snel gericht een beeld kan krijgen welke o…
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[BGM.zip](https://github.com/openMSX/openMSX/files/10434545/BGM.zip)
`set power off`
`ext ide`
`diskmanipulator chdir hda /`
`diskmanipulator export hda bgm`
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Here I suggest to add a link to [https://github.com/fboehm/gemma2](https://github.com/fboehm/gemma2) in the README.md
GEMMA is a great CLI tool. Some people, however, prefer to work from R. At #35 …
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To speed things up with large dataset (and enough RAM) we should compute in one go - caching K if available. With the new faster-lmm-d code this should be achievable.
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Gemma would benefit from a Python wrapper. Mostly to deal with arguments/options and pre-parsing/validation. Caching, LOCO and permutations currently in the Ruby gemma-wrapper can be moved across too.
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Gemma should be able to read [R/qtl2](http://kbroman.org/qtl2/assets/vignettes/input_files.html) formats. Not only is this easier from R, but also these formats are more informative and therefore it i…
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It would be preferrable if the R variables could be passed directly to GEMMA without having to save files.
Perhaps it could even be turned into a small R package (e.g., `rgemma`).
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We should add leave one chromosome out support to GEMMA. From what I can tell from the source code this is not particularly hard because GEMMA already tracks chromosome information. We need to recompu…
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There are plenty of MuSICA (.BGM) files in my library that are not being recognised by the demo player.
I attached them here, to help you with the debugging.
[Problematic_MuSICA_files.zip](https…
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...zodat ik de nieuwe standaarden kan plaatsen en weet voor welke referentiecomponenten en systemen die deze implementeren relevant zijn.
NB. Op dit moment staan voor de referentiecomponenten allee…