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Hey there,
I'm trying to run your tool but I think it expects the vcf files to have a specific FORMAT column.
`grep --color=auto -v '^#' $WT | \
awk '{split($10,a,":");if(a[4]>=int("'$COV'") …
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I'm testing Gnomix on 23andme genotype data using the pretrained models, and the results I get seem completely incorrect. While the individual is of Eastern European and Jewish ancestry, but the pred…
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Hi,
I'm getting this error and seems like an project_all_alignment.fna file is not generated.
error logs below:
[22:46:43] Checking version: samtools --version is >= 1.3 - ok, have 1.14
[22:46…
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Hi,
I am having an issue with longshot not calling SNPs that I know to be true. They seem to be filtered out based on strand bias (FILTER sb).
I'm using the following command:
longshot -r CYP2D…
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The loading of snponly.efi stops during startup. The assembly was performed using the command:
`make bin-x86_64-efi/snponly.efi EMBED=start.ipxe DEBUG="pci,nii,snp,snpnet,snponly,efi_driver,efi_debug…
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Hello,
I saw a few tickets reporting a similar issue when using:
./munge_sumstats.py \
--sumstats UKB.GWAS.txt \
--N 336974 \
--ignore BETA \
--out UKB_DR \
--merge-alleles w_hm3.snplist
…
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Hello,
I am trying to use the igvm branch of [QEMU](https://github.com/coconut-svsm/qemu/tree/svsm-igvm) for SVSM and regular AMD SEV-SNP virtual machines. SVSM works fine with the igvm file. But w…
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Problem: Streaming variants without a specific order imposes large requirements
on server side annotations.
Consider an example of performing haplotype annotations in which we have two
adjacent SNP…
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Hi Roy,
Great work! And would you mind pointing me to the code in your QEMU patch where the vCPU registers are set? As I understand it, the `construct_vmsa()` method in `src/vmsa.rs` is just to set…
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### Description
Polars currently has three string-splitting functions:
- `str.split()` -> list of `n` strings
- `str.splitn(n)` -> struct of `n` strings: makes `n-1` splits
- `str.split_exact(n)…