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When run the tutorial "https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html"
```{r}
#Add Clusters
proj
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Hello, I've recently had the need to re-run an analysis I did a few months ago and was surprised to see I couldn't reproduce the results. Upon trying with a minimal example (vignette example) I realiz…
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many times users have complained that the chosen keepX is too strict. Here's an example for `tune.spca` for component 2:
``` r
suppressMessages(library(mixOmics))
data(multidrug)
set.seed(2341)
…
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Hi, I have a problem in SingleR installing
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.2 (2019-12-12)
#1
devtools::install_github('dviraran/SingleR')
Error Msg===============
Faile…
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Hey!
This is a great pipeline. I have been using sc_long_pipeline function and the gene quantification step fails. However, when I run this function with do_gene_quantification = FALSE in my configur…
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Hello, I was running the model steps for your package. I have use `pip install mofapy2` to install the package. However, it seems that the package version keep goes to 0.6.7, not latest 0.7.0, and res…
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I am observing a different cell type clustering UMAP compared to the "Constructing single-cell trajectories" vignette. Can you please let me know how I can fix this?
This is my info:
R version 3…
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Dear @jaspershen , you put up an impressive amount of R packages, congratulations!
I was wondering if you would be maybe interested to increase the interoperability with some of our packages for M…
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## Problem
- Currently each data byte/recipe uses `library` to invoke the R packages necessary for each
- However, this means that *you cannot render the website if you are missing any of those R pa…
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## NIFTI
- [x] afni
- [x] freesurfer
- [x] ANTs
- [x] mango
- [x] 3Dslicer
- [x] mricron
- [x] mricrogl
- [x] mrtrix3
- [x] itksnap
- [x] FSL
- [x] mi-brain
- [x] dcm2niix
## python (…