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Hi,
I have two BAM files that I'd like to compare. Each is about 5.6GB. I expect them to be identical (I'm sort of doing a reproducibility test).
When I ran with the following command:
```
b…
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Hi,
I wonder what the solution to #127 was or if it's supposed to be taken care of by now and done. I'm getting the same type of error running a command like this (installed HINT a few days ago):
…
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Hello @cmdcolin,
We are deploying JBrowse2 @UMCCR, [primarily for the htsget support](https://github.com/umccr/data-portal-client/pull/88), so that different web-based clients work fine using one d…
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Hi, I am using the latest biocontainer with cnv_facets: 0.16.1 installed.
From a set of 11 samples, I just have one sample that has the issue pasted below when the output vcf is being indexed. Nota…
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Dear vRhyme author
Thanks for sharing this powerful tools. I have 63 samples and I merged all the 63 samples in to one file into clean.3.fa but I do not have the merged bam for clean.3.fa. So I tried…
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I have a sample with BCL2-IGH verified by FISH. There are lots of reads to support viewed by IGV. the pictuers is as follows. I am running with default parameters，and BCL2,IGH is included in csv fil…
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Hi folks,
Is it possible to preserve the timestamp of the original BAM file when creating a CRAM?
thanks
Richard
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Hi. I use Bamtools as a library in [Samscope](http://samscope.dna.bio.keio.ac.jp) (thanks for the excellent work, btw!), and a user sent me [a BAM file](http://samscope.dna.bio.keio.ac.jp/test/bad.bam…
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In looking at some of my datasets, I found that Tangram calls using BWA-MEM alignments passed through the TANGRAM_BAM tool ONLY show split-read calls. Not a single paired-end read was used for any MEI…
RPSeq updated
9 years ago
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yuifu updated
5 years ago