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I ran Cheshire-gapfilling on several test GEMs. However, is there a function to obtain the outputs of the GEMs with the suggested gap-filled reactions added to the GEMs?
Best,
W
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FW Rebug 4.84 Cobra CEX CECHB00
When I press L3+R3 to activate FPS counter plugin the system instantly freezes and I have to hard restart to reboot the system.
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Hi everyone,
I recently installed CobraToolbox as well as Gurobi version 9.50 in order to use `uFBA`. However, when I run the test function `testuFBA`, I have the following message
```
Each mode…
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RAVEN should support writing a [cobrapy](http://cobrapy.readthedocs.io/en/latest/_autogen/cobra.io.yaml.html)-compatible yaml format, as this format is very concise.
- [x] make `writeYaml` function…
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I am trying to predict interactions between microbes using the simulatePairwiseInteractions function with my models created through CarveMe.
I modified the 'HighFiberDiet_Oxygen' condition provided …
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@HAHerrmann a new issue seemed more fitting.
> I have been using the ACHR sampler using cobra both in Matlab and Python. In Python when plotting the flux distributions it is obvious that the sample…
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How does CUE differ when grown on two individual carbon sources vs when the media contains a mixture of the two? Run the mix with and without caFBA.
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Hi, I have problems executing the code, my setup is
MAC OSX
opencobra 7e6385f
Gurobi7
Matlab R2012a
I get the following error output when I run main.m:
MException
Properties:
i…
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I'm trying to use gapsplit to indirectly sample metabolite concentrations by sampling "cumulative" fluxes and then applying those to initial concentrations. I'm then applying upper and lower bounds o…
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-Under Widget 1: "You can check this file by going to the CaseStudy1 folder and opening the **corrsFlat.txt** file in any text editor. Here is what the header and first five **lines of dat this fil…