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echo "No reads in /dell/muscle/sample9_2.fastq.gz" > samples/sample9/read_statistics/fastqc_stats/sample9_2_fastqc.html && echo "No reads in /dell/muscle/sample9_2.fastq.gz" > samples/sample9/read_sta…
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You probably already know this. Just put a note here as something to consider in the future.
> DRAGEN can stream input files directly from an AWS S3 bucket, Azure Blob storage account, or by using …
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--methy_extract writes output inside bmm folder I give to it instead of writing to current working folder.
For instance if I have:
```
/opt/BitMapperBS/bitmapperBS --methy_extract /data/indexes/ho…
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**Describe the bug**
I'm trying to generate a simulated dataset by using some different references and a configuration file like the one described in the examples of the README, but they both fail wi…
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Here is the head of the file `stats_fastp.json` for a random single-end Illumina sequencing sample:
{
"summary": {
"fastp_version": "0.23.4",
…
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**Describe the bug**
Hi I am running:
CRISPRessoWGS -b "reads.bam -f vegfa.tsv -r hg38.fa --name "output" --exclude_bp_from_right 0 --exclude_bp_from_left 0 --quantification_window_size 10 --min_f…
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Hi,
could you tell me that which file in Stereo-seq data is or contains CID whitelist?
And when I get the CID barcode, how could I know the position in the chip?
Thank you !
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v1.2.1
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No resp…
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I used to analyse FASTQ files coming from the PGM system (ThermoFisher); Often, Mtoolbox failed on 1 sample at least ; and I am not able to solve the issue except when eliminating some reads from the …
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i have around 60 samples, that performed paired-end seq for metagenome, total ~400G clean data.
i have combine all forward reads and reverse reads, gained F.fastq,gz and R.fastq.gz. and than i run:
…