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Hello,
I've mapped my whole genome sequencing reads from S.cerevisiae to the yeast genome using HISAT2 to generate my .sam files. I've set up a brand new conda environment with java and quickvarian…
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```
STAR --runThreadN 16 \
--genomeDir sheep/geneome/STAR/ \
--runDirPerm All_RWX \
--readFilesCommand zcat \
--outSAMtype None \
--soloType SmartSeq \
…
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Assuming none of these features are added to #133 which hasn't merged at time of writing:
## Must haves
- max line widths are currently ignored.
- rework how command text is processed
- T…
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Hello,
I have some whole-genome sequencing BAM files of T-cell leukaemia. I was wondering how I can modify IgCaller to call T-cell receptor (TCR) rearrangements. Some guidance on how I can modify t…
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@JianjunJin I encountered similar issue while assembling cp genome, but it's not because if version of SPAdes or python. I got only extended_1_paired.fq, extended_2_paired.fq, extended_1_unpaired.fq, …
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### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.or…
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There are 692 samples in data release 2 which are missing (Genome)-[HAS_SEQUENCING_READS]->(Cram) relationships. These need to be repaired.
```
MATCH (s:Study {name:"WgsDataRelease2"})-[]->(:Parti…
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Hi,
We'd like to request a new term as part of the CFDE project for Kids First DCC.
new term label: linked-read sequencing assay
parent: DNA sequencing assay, OBI:0000626
definition: A DNA seq…
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I'm aligning 10x genomics scATAC-seq to the rheMac10 genome. The sequencing is 50bp for R1 and R2 paired-end sequencing on the Novaseq. The genome was built with k`17` and w`7` for min frag `30`. But …
badoi updated
2 years ago
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Dear@Kinggerm
Thank you for your constant updates to the software. I'd like to ask for advice if it's convenient for you. That how to use GetOrganelle to capture organelle genome data from the th…