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Hi,
The final assembly length (contig and scaffold) is about 25% shorter than estimated (151Mb vs 199Mb). Could this be due to more than repetitive regions - i.e. coverage below some threshold? This…
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Hi, when I download vntr_data_recommended_loci.zip , there are two files ( illumina and pacbio ). If I have Nanopore data, can I choose the pacbio file or do you have a specific nanopore file that I c…
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when I only used a 15G*2 PE data to run MetaPlatanus without any naonpore or PacBio data, a high High memory usage (nearly 500 G) occurred, than MetaPlatanus crashed (cpu=0, memory=99%). I have no …
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Dear Jim,
Thank you for the amazing IGV notebook tool.
I recently wanted to visualize some alignments (in BAM format) using IGV notebook against the T2T genome from RefSeq (GCF_009914755.1). I …
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**Operating system**
redhat
**Package name**
```
pbmm2 1.13.0
Using:
pbmm2 : 1.13.0 (commit v1.13.0-2-gbcd99f5)
pbbam : 2.4.99 (commit v2.4.0-23-g59248fe)
pbcopper : 2.3.99 (comm…
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`chr5 20023781 Minda_109 N N]chr5:155777975] . PASS SVLEN=135754194;SVTYPE=BND;SUPP_VEC=PB_severus_INV5637,ONT_severus_INV6502,ILL_MantaBND:95378:0:1:0:0:0:1,PB_ID_12426_2,ONT_ID_30658_2,PB_Sniffles2.…
jzook updated
2 months ago
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Hi!
I'm trying to run masurca with Illumina pair end libraries and pacbio long reads.
Here you have my confog file:
DATA
#Illumina paired end reads supplied as
#if single-end, do not…
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Combined ES + GS data/ short and longreads in a single project
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I'm trying to run the haplotypers on the Silverback cluster on the HIV data and am getting errors when running aBayesQR and regresshaplo (and savage but the problems with that are already known).
…
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Dear developer
Thank you for developing such innovative software, I would like to know if this software can be adapted to PacBio CLR, PacBio Hifi and Nanopore data？
Thinks