-
Hi,
Thanks for developing this great tool. I just have 2 questions regarding CITE-seq-Count.
Question1:
So, I have a multimodal scRNAseq dataset in which both CITEseq and Hashtag antibodies wer…
-
I’m slightly uncertain which DNA measures are optimal for the frequency based method (especially in case of samples containing animal tissues, where the proportion of microbial to animal DNA is often …
mniku updated
4 years ago
-
I try the extra.yaml for example 2 or 3.
```
python task1b.py -p extra.yaml
```
then I got
```
[I] Collecting training data
[E] Uncaught exception (logging.py:221)
Traceback (most recent ca…
-
Although the documentation of each part of MISO is quite complete and good, there is no (descriptive) "connection" between "things".
It is hard, if not impossible, to follow the path of a sample[1] s…
-
Hi, I would like to use lentiviral plasmid barcode libraries for lineage tracing based on an approach called STICR that was developed in a Nature paper last year. I have ordered two plasmid pools from…
-
Lims Issue
---------------
For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** NovaSeq 6000 v1, NovaSeq X v1
…
-
**Describe the bug**
Hi, Im trying to run mgatk on a tenx run I did using the dogmaseq protocol.
When running:
`mgatk tenx -i ./PATHTO/atac_possorted_bam.bam -n mtMSC -o /PATHTOOUT/mtMSC -bt CB…
-
I am a bit confused about the "preparation of expression matrices" section in the STAR methods of the optimal transport paper. You define three different expression matrices: the UMI matrix, the log-n…
-
Can you please suggest what values should be manually assigned for resolving the following error?
> [17/10/2017 11:26:33] Sorting splice-graphs by read count
> [17/10/2017 11:26:33] Finished s…
-
**Description of the task:**
@hannes-ucsc pointed out that these 4 datasets have at least 1 specimen which was the sequencing input.
https://data.humancellatlas.org/explore/projects/6c040a93…