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Hello,
i am following the template example and trying to run analysis but i got the following error
```
PolarTraits
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Hi! I'm writing with a question about input matrix size limits. I have a large alignment file-- 158 individuals, 49M sites, and I'm getting a segmentation fault error. Do you have any recommendations …
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Several files cause compiler errors when building on branch `arc64` (aka dev branch) which is used for daily builds.
``` console
$ ./crosstool-ng/.build/arc64-snps-elf/buildtools/bin/arc64-snps-el…
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I am running admixtureBayes on a set of ~400 yeast strains with 20k SNPs out of which 6k are independent. So far I have benchmarked only up to 1000 iterations (-n 1000) and 16 chains which took 9 hour…
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Does this tool only simulate homozygous SNPs or is there an easy way to specify some proportion as homozygous and some proportion heterozygous?
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Hello,
I am interested in the command “--incld_ambig_snps”, when I do not use this command MTAG removes over 600,000 SNPs out of 4,000,000 SNPs. I have tried MTAG both ways (with and without the “…
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Hi,
I have two sumstats, before doing genetic correlation, I have intersected the SNPs of the two data and generated the sumstats.gz files. When I do rg, it reports this error:
./ldsc.py \
--ref-…
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Hi there,
I am running mtCOJO analysis using Alzheimer's Disease while conditioning on Small Vessel Disease. I am using LD reference from 1000 Genome reference for EUR population and LD scores and…
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Hello sir,
Sorry to bother you;
I have a question about gemma's theory of analysis. H…
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So far the phenotypes and the SNPs are rather independent from each other, making it hard to link one to the other. But in principle we already have the information needed to link them, at least in a …