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Hi,
Thanks for developing such a wonderful tool for long-read analysis. Recently, I performed Severus to call somatic mutations between paired tumor-normal samples using the command
`--target-bam…
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hi,
we just installed deTin recently. Python3.7 was required. We also installed all packages. When we tried to run the example data with the command recommended:
python3.7 deTiN/deTiN.py --muta…
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Hi,
I'm experimenting with running COMPASS (using CNVs) with multiple samples (3 samples), where the cells then come from different runs with MissionBio. A problem is that they got sequenced at dif…
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Build derived datasets for TCGA
For each sample, number of mutations -- this measures tumor mutation load, mutations include all types of mutations.
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Hi
thanks for putting together these great learning resources.
Would it be possible to add the correct answers and some explanations to the exercises at the end of [intro lesson 00](https://gith…
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RIS files with numeric `LB` field fail on search and review. ASReview classification value is filled with those LB values. Because they are not `0` or `1`, items are handled incorrectly in the prior k…
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Hi,
Thanks for your great tools!
I am running version xTea=0.1.6 installed using conda and installed short reads with the latest version by "git clone https://github.com/parklab/xTea.git"
we genera…
tkrwy updated
5 months ago
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Hi,
I am trying to run this tool on WES data, since thie only input file is based on VCF.
I am wondering did you ever applied this method on WES data, and how does it prefoms. Any other suggestions…
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Hi,
(Is it better to post this here or in the google group? As I'm not sure this is an issue, rather an operator error)
We have a project in which we want to include both germline and tumor sample…