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Hello again ;_;
I ran into another issue
Thanks in advance!
**Are you using the latest release?**
v1.8.8
**Describe the bug**
A little unsure about this
output error:
```
ERROR: G…
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Installed scTE in a Conda environment but kept getting problems until I upgraded to python 3.9
When python=3.6, I couldn't install a recent enough version of scipy (required scipy >= 1.8, but 1.8 dep…
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**Are you using the latest release?**
`funannotate v1.8.11`.
**Describe the bug**
funannotate test is failing at the predict step with error "Not enough gene models 175 to train Augustus (200 re…
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Hi,
I'm parsing a genemark_gtf into funannotate predict as utilising genemark_path isn't working (through various rounds of trial and error, I'm not sure why as gmes_petap.pl works as a stand alone s…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
Yes
**Describe the bug**
A clear and concise descr…
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Hi
I tried to search genename on hg19 genome but the server crashed as reported in the log window.
```log
# /var/log/apache2/error.log
subtileKnife starting... >>>>>
cgi param parsed
Hooked …
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Hi there! I have a question about how RiboTricer handles unannotated sequences.
**Purpose**: I am trying to run RiboTricer after generating BAM files using SQUIRE (which does both gene and transpos…
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see GO ticket go-ontology/issues/23135
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Dear author,
I apologize for bothering you. While using SoloTE to quantify transposable elements (TEs), I noticed that during the final step of splitting the BAM file, only a few chromosomes were l…
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As a beginner in the field of bioinformatics, I am particularly interested in understanding how TEtranscripts performs in the context of long-read sequencing data analysis. Could you please provide in…