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Hi,
I would like to test your tool. How can create the two input files. I have the results from a cellranger run, i.e. bam, fastq, and count matrix.
Thx
Bernd
baj12 updated
3 years ago
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Thank you for creating the helpful tutorial. I have a question regarding the differential analysis section of the tutorial, in which a count matrix is generated. I realized from both my count table th…
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Hi, I am trying to calculate the kmer profile of this 5.0 Gb genome. Here's the command:
kat comp -t 32 -m 17 -o genome1VSgenome2 -h 'fastq1_R1.fastq.gz fastq1_R.fastq.gz fastq2_R1.fastq.gz fastq2_…
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Hi,
When I use Rscript I met a problem:
```
$Rscript ./bin/clustering_chrs.R distictive_kmer_and_counts cluster_center.pdf dendrogram.pdf
Loading required package: ggplot2
Welcome! Want to lear…
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Dear Christoph,
Where I can find the final assemly result in outputs from MITObim.
In tutorial (see **https://github.com/chrishah/MITObim**), you mentioned that it is under the following:
-…
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Hi,
I have a few questions regarding the exonrunPairedSim function and wonder if you could provide some insights.
1) The coverage was achieved when cov exceeds coverage using cov += 2*batch*subblo…
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Dear author,
I have met a problem in countReads.my code is as following:
samplename = c("wt1","wt2")
monster
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I receive the following error message when when I try to run TEdenovo on my assembly
```
Fatal error: Exit code 1 ()
cat: /home/jeremy/galaxy/tools/Pipeline/REPET/WORK/genome_Blaster_Grouper_Map/…