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Good day.
I am trying to install SAMTools 1.3 on Cygwin using my Windows8.1 64bit machine. I successfully ran the "./configure" command as shown below:
$ ./configure
checking for gcc... gcc
checking …
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### Describe the bug
Hi Pavel!
I'm trying to run `harpy sv naibr` but keep running into this error:
```
╭──────────────────────────── harpy sv naibr ─────────────────────────────╮
│ Samples: …
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Hello, I am getting this error
```
[12907] [2020-05-22 13:22:59.879] [GLnexus] [error] ARC_D30.g.vcf.gz Exists: sample is currently being added (default (ARC_D30.g.vcf.gz))
[12907] [2020-05-22 13…
ghost updated
4 years ago
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Perhaps this is just a documentation issue, but I am having problems (memory issues) with `hts_idx_set_meta`. Here is the source:
```C
int hts_idx_set_meta(hts_idx_t *idx, uint32_t l_meta, uint8_t…
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@mbaudis @pnrobinson
The PRC required a more extensible replacement for `HtsFile`. The comments and responses quoted below are from the PRC review.
PRC initial comment:
> Even among “hts_fil…
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Hi IfcOpenShell community,
Whilst using the `ifctester` package, namely the `reporter` and `ids` modules, I get an error when I attempt to create a BCF output file. The bug seems to originate in t…
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Hello, I think `bcftools isec` might have a memory leak. I ran a script 3 times today that was having an error in the step after I ran `isec`, and even though it was the same command with the same fil…
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**Heterozygous genotype with two non-reference alleles**
As [proposed by @nh13 over in another issue](https://github.com/varlociraptor/varlociraptor/issues/153#issuecomment-830391640), this would b…
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Hello, I encountered some bugs while running SVDSS2 according to the Snakefile. The first two steps seem to completed successfully, generating the hg37.fmd(3Gb), smoothed_reads.txt(90Mb), and smoothed…
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make all-recursive
make[1]: Entering directory '/beegfs/home/wangshouchuang_L/workspace/09.tea/01.methylation/soft/BatMeth2'
Making all in src/mealign
make[2]: Entering directory '/beegfs/home/wan…