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There are a number of important molecular and scientific models that I would love to see implementations for in DeepChem. Implementations of any of these models would be a great contribution to DeepCh…
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Hello,
We are trying to understand the implementation of RRCF and have a few queries regarding tuning some of the hyper-parameters. Kindly help us in better understanding, the effects of the follow…
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A good starting point is Pfam_SARS. I reviewed it a few weeks ago, and IIRC it has pretty good coverage of Betacov genes, but doesn't include some of the genes towards the 3' end found in other genera…
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## REPREX
### Code
> from Markov_DNA import MCM
seq = 'ggggccccctttttaaaaaaatttccccc'
mcm = MCM(0, mode=1)
mcm.train(seq)
seqs = mcm.generate(len(seq), N=10)
### Error
ERROR: Undefined t…
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Comment below with questions or thoughts about the reading for this week's workshop.
Please make your comments by Wednesday 11:59 PM, and upvote at least five of your peers' comments on Thursday pr…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Feature Description
A Part-of-Speech tagger using a Hidden Markov Model (HMM) assigns grammatical categories t…
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Hi,
I'm working on my master thesis and I found the simulation very interesting .
I'm running the following launch file :
start_demo_auv_control.launch
Gazebo and rviz are running smoothly
I…
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Hey @joemans3, thanks for making this package. I just accidentally stumbled upon it.
Wanted to let you know that I also just made a wrapper (https://github.com/tlambert03/fpbasepy or `pip install …
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from: @jack-bilby :
> 12: aperm.default(X, c(s.call, s.ans))
> 11: aperm(X, c(s.call, s.ans))
> 10: apply(x, 1, function(y) (sum(is.na(y))/length(y)) > maxNA.fraction)
> 9: which(apply(x, 1, fun…
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OK, So, We are using a pretrained model for metagenome simulations, We have a standard read count and 2 samples are getting generated, however when we are changing the no. of species that should be in…