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Hi Oliver
What aligner would you recommend running before SVachra and with what parameters?
Thank you!
Maria
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```
What steps will reproduce the problem?
1. bseqc mbias -s my_data.bam -r my_genome.fa -l 101 -n test_mbias -g 841000000
What is the expected output? What do you see instead?
Program does not run t…
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While most human population genomics datasets are now able to achieve >30x sequencing coverage on the regular, for a lot of non-model organism studies its becoming more popular to instead use low-cove…
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Dear Shaked,
I get following error while running TRAPeS on our data:
2018-01-20 18:49:17.504397 Working on: test
2018-01-20 18:49:17.508777 Pre-processing alpha chain
2018-01-20 18:49:17.527181 …
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### Description of feature
The DNPM KDS draft includes a set of clinically relevant scores which can be calculated and derived from data generated during alignment and variant calling. As a long-term…
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(copied from https://github.com/sourmash-bio/sourmash/issues/461#issuecomment-1993390314)
Hi Titus @ctb , I don't know whether I could ask the following questions related to this issue, anyway....
…
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Hi,thank you for your work. I tried to use prepareAA accompanied with AA to detect ecDNA on mouse but found there calls a error when I entered the command line.
```
(HRenv) [renhb@localhost ~]$ p…
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A) Revise project summary based off existing project resources
https://oicr.slack.com/archives/C066W5703RU/p1729525647009309
B) Review OHCRN docs for Readme updates:
https://github.com/Pan-Canadian-G…
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Initial group info you provided:
-----------------
| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…