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Issue reported by email from [Scott Brown](http://www.holtlab.ca/personnel.html#scottb):
>I have a question regarding the protein sequence output from Isovar. I have seen multiple cases where th…
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Locus breaker identified 41 loci for 40 proteins in which the boundaries' of the locus were the same.
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They seem to be missing.
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- The uniprot database (http://www.uniprot.org/) contains information about proteins. The goal is to download information about malGlo and malSym proteins, parse out info about particular regions and …
mrshu updated
6 years ago
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I have been trying to prep a local folder of 56 structures using the CLI via ` asap-prep --target SARS-CoV-2-Mac1 --structure-dir SARS2_Nsp3_Mac1_main --save-to-cache --cache-dir mac1-prepped --output…
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In the iq package, we use the following code to compare protein quantification between iq and MaxQuant?
Line1: w1
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Congrats with an impressive work
I wonder a bit about my results for my protein-dsDNA complex, which are of very high ipTM, but suprisingly low pLDDT. How does this even make sense? I would think t…
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Amber can give different names to histidine amino acid by examining which protons are present : HID, HIE, or HIP instead of HIS.
This raises an issue when featurizing the protein in Diffdock becaus…
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I'm attempting to generate predictions for multimeric complexes, where one chain is a chimeric/fusion protein and has components from different organisms. About ~85% of this chain is from one organism…
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Hi!
I am trying to download the full db using Aspera and I got an error at step 9 :
Completed: 392708K bytes transferred in 58 seconds
(54553K bits/sec), in 14 files, 1 directory.
2022-02-15 …