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Hello
I noticed something strange after running Pilon twice on the sequence, the BUSCO score reduced from 93.6%(Obtained after Pilon 2 runs) to 76.4% when I ran Racon on the second Pilon polish.
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While most human population genomics datasets are now able to achieve >30x sequencing coverage on the regular, for a lot of non-model organism studies its becoming more popular to instead use low-cove…
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CWL allows to describe tools/pipelines/workflows and enhances reproducibility. Hoverer, describing is not only about how to run or technical info about execution environment but also about what this …
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Hi Johannes,
I am trying to generate a mouse `EnsDb` for release 105, but unfortunately it doesn't work... I *think* this has to do with the library `ensembldb`, but I am not 100% sure. Would you min…
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Initial group info you provided:
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| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…
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> python /home/arkg/EMIRGE/emirge.py emirge-output/ -1 ../../JdF_1362A_J2.573-2/reads/SSU_reads/JdF1362AcombinedSSU.fastq -f SILVA_132_SSURef_Nr99_tax_silva_trunc.ge1200bp.le2000bp.0.97.fixed.fasta -b…
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If I have files output from AA and AC, is there a way for me to experiment with the cycle view /genome browser to investigate potential larger structures formed from my cycles/paths? Would be good if …
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Hi Tobias
I haven't dug closely into the source code for this, so apologies if this question is a bit lazy:
What are the metrics affects by using the optional `--bed` flag for `alfred qc`?
I…
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Hi,
Thanks for developing this great tool.
I'm trying to use GenomeScope 2 to identify the ploidy of two plant samples.
The result of sample A indicates that it's a tetraploid. But the result of…
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Thanks for your wonderful tools!
I have a collection of viral genomes (~6000 strain genomes, length=10000 bp per genome) and I am using vg to build a vg graph with these genomes. I have used tw…