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I have attempted to run casanovo on previous mgf files that were successfully processed in casanovo a month ago using a GPU Enabled Ubuntu instance. Now, casanovo is giving this error whenever I try t…
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I'm trying to understand the `detect:mapping_tolerance` parameter of FeatureFinderIdentification. According to the documentation, this parameter is the allowed difference of RT between the PSM and fea…
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Is still experimental and the following issues need to be resolved:
- [x] **Allow consuming merged IDs**, if you want to perform e.g. Percolator across fractions. Think about including rescoring into…
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Hi, I am testing the library-free search using DiaNN. I ran DiaNN in Windows and Linux with the same input file, fasta file and parameter setting. I found that there were some differences in terms of …
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I have problems with the `raw_file.select_instrument(Device.MS, 1)` line using Python 3.10 on Windows 10.
File loads properly and lines such as `raw_file.instrument_count` and other sample-related …
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Installations instructions text should read:
1. If you are new to computational mass spectrometry, we suggest you read the "tutorial computational mass spectrometry" [this tutorial is to be develope…
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### Description of the bug
@jpfeuffer @daichengxin :
ProteomicsLFQ is failing with this SDRF: https://github.com/multiomics/multiomics-configs/blob/master/projects/additional-reanalyses/PXD007145…
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**Submitting author:** @jdasm (Jesse Smith)
**Repository:** https://gitlab.com/jesseds/apav
**Branch with paper.md** (empty if default branch): JOSS
**Version:** 1.4.0
**Editor:** @rkurchin
**Rev…
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Hi.
I was looking at the code on how you calculate the dose and I am wondering what is the 0.997 constant value. I am guessing this is the x in the formula but I don't understand where you got tha…
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Hi there
I am running a non-specific peptidome search and it runs fine when I set the variable mods to 0 (actually there are no identifications but I am working on that) , however, if I set the var…