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Hello,
Firstly, I'd like to express my gratitude for this excellent package and idea. I am working with Spatial Transcriptomics (ST) data and trying to convert my ST object to a Loupe file. I have …
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spaceranger-2.0.0
In spaceranger output "spatial" folder, we have following files
aligned_fiducials.jpg
detected_tissue_image.jpg
scalefactors_json.json
spatial_enrichment.csv
tissue_hires_i…
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https://mp.weixin.qq.com/s/5h9t9Li7yShs8Mh8FlDcVg
ixxmu updated
7 months ago
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https://mp.weixin.qq.com/s/9BOiQ-dHQQYvXpjB72_pTg
ixxmu updated
4 months ago
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Dear all,
I manage to implement the function but when I'm trying to find the downstream signaling the function ".checkReceptorSignaling" does not work. It tells me that the it does not find the Rea…
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This was discovered in the addition of data model integrity tests #287.
@PozhidayevaDarya can you check the Visium RFC for how this attribute was intended to be used and add a PR to fix or remove?
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- [ ] Lesson Development & Review
- [ ] Pilot Workshop
- [ ] Lesson Development & Review
- [ ] Scale Up
- [ ] Analyse feedback
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Cluster of RAB40B and XLOC_I2_008134 have the opposite phenotypes of a cluster of PIK3R3 and INSYN1 - googled most connections and got nothing so it may be novel.
Emailed Scott Soderling Duke Dec 1 h…
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Hi, I was just wondering if ANNOgesic is able to handle data received from nanopore RNA-seq output? If I can map outside the pipeline and provide wig files directly, also if the data is not stranded (…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/NajlaAbassi/iSEEfier
Confirm the following by edi…