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Maybe stupid idea (and eventually being already covered by neutral loss spectra): assume we have a feature for a `[M+Na]+` of an ion. MS2 spectra for such an ion might (will) not match a reference `[M…
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Hi expert,
I have learned the examples of how to preprocess DDA data (https://bioconductor.org/packages/release/bioc/vignettes/xcms/inst/doc/xcms-lcms-ms.html#2_Analysis_of_DDA_data and https://bio…
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Right now, and apparently for some time, the results of live or die and extract differ in both classic and normal modes of operation. The fluxes from extract are systematically lower. The problem app…
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Hello,
I am trying to use rMSIproc with imzML files.
The process runs and load the data as follows:
Processing execution 1 of 1
Loading Image...
No ramdisk directory, it will be created
…
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Add the rounding recommendation, described in the following paper:
```
Khrisanfov M, Samokhin A.
A general procedure for rounding m/z values in low-resolution mass spectra
Rapid Commun Mass Spec…
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After long testing and removing every single mod, I figured out that KIS causes incredible performance loss when interacting with mystery goo, you'll see extreme fps drops, than from then and onwards …
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Hello,
I am unable to get the example "casanovo --mode=denovo --peak_path=[PATH_TO]/sample_preprocessed_spectra.mgf" to run successfully. I am not sure what needs to be changed. Any suggestions would…
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Hello,
When I try to run the "spectralMatching" function from the msPurity package on R I run into the following error:
``` r
q_dbPth
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SearchGUI on usegalaxy.eu requests a json file that is not described here. What is the format of this "Identification Parameters file"? Can you provide details on what it should contain?
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I got the following error when trying to run a `concatenate_and_load`:
```
File "/shared/sudlab1/utrons/utrons_env/lib/python3.8/site-packages/ruffus/task.py", line 712, in run_pooled_job_witho…