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Hi there!
I was looking for some feedback using wfmash to align some large (>6gb) plant genomes that are super repeat-dense, around 90%. I was able to make an alignment between species successfully (…
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First, a suggestion: It would be very helpful to be able to turn off the screen output. We use fastANI with a single query genome against a long list (thousands) of reference genomes (--refList option…
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HI,
is there a way to call peaks genome-wide instead of the chromosome by chromosome? I guess I could make multiple chrxx_chrxx.txt files, and then concatenate all the calls, but i was hoping there w…
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The document says that the graph generated by Minigraph has no cyclic, which from my understanding, is a directed acyclic graph. However, when I checked the file `hprc-v1.0-minigraph-grch38.gfa`, I fi…
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Hello,
Curious if you have tested CoreDetector using repeat unmasked version of large plant genomes?
Kind regards,
B
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KP.3.1 acquired again s:S31del and curiously also this time, AS KP.3.1.1, it is accompanied by a NSP10 mutation that will make possible to track the lineage. it is already in three countries so we wil…
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Hi,
I did a NGS survey and a TGS survey, the estimated size is about 2.2Gb.The genome size of p_ctg.fa is 1.69Gb
, smaller than survey. Can you give me some suggestion? It‘s an insect of dipter…
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Hi,
I've been gratefully using ExomePeak2 for my m6A differential methylation analyses.
Although I was focusing on eukaryotic hosts, I am interested in analyzing m6A in ssRNA & dsDNA viruses, and …
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Hi,
I am trying to plot Cytoband labels on the ideogram.
It works if I use the default hg19 genome, but not when I use my own genome region and cytoband files.
This is my code:
```
cyto_bed
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hi all:
is there any possible to change the config file to use hg19 genome for xHLA, can you tell me which files need to be changed?