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I've aligned reads to a de novo assembly using BWA-MEM rather than Long Ranger align. The BWA alignments have the `BX` tag but no `MI` tag. Would you consider implementing a module to group together n…
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## Expected behavior and actual behavior.
I expected performance of gdal_calc to be similar with and without the --projwin parameter, however it seems to take significantly longer when using the --…
rooby updated
3 years ago
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Hi. I have encountered hundreds of unmapped accessions, for examples NZ_LS483329, when building database from virus, bacteria, archaea, fungi, protozoa and human reference genomes, with est, gb, gss a…
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Hello!
I am having some problems with the prepareHTS step, using WES bam files.
_This is the script:_
ascat.prepareHTS(
tumourseqfile = "/proj/nobackup/ascat/data/116_cycle2.recal.bam",
n…
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[Ongoing changes](https://proj.org/development/migration.html) in the representation of coordinate reference systems in the [PROJ](https://proj.org), external software used by **sf**, **sp** and other…
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A common task we want to support is to answer position based queries, where a user wants to find out something about a given range of genomic positions, and therefore needs to convert that into a rang…
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Is there a way to replace the value in a feature service with the **domains** values?
For example, when I run the following, I get **code** for the "iso3" column:
``` r
library(arcgislayers)
…
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I am trying to run the [tutorial workflow](https://kevlar.readthedocs.io/en/latest/tutorial.html) with kevlar v0.7+15.gebabd62.
The Snakemake workflow stops when coming to the rule "assemble", throwi…
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The Web Annotation Data Model needs iteration...but I'm not sure the Web Publishing WG is the place to do it...yet.
Given #38 and #40, there seems to be a need to iterate on the Web Annotation Data…
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Greetings,
I'm attempting to run ascatNgs and I'm running into the following error:
```bash
HREAD_EXITED: General output can be found in this file, last 10 lines below: /tmp/nxf-367256932351564…